SARS-CoV-2

Phylogenetic Analysis SARS CoV 2 With UShER

omicx.cc
Create Multiple sequence alignment of your sequences Use SARS-CoV-2 isoloate Whuan-Hu-1 (NC_045512.2) as the reference. Download metadata Metadata from GISAID Data are available from EpiCoV. Fileds of GISAID metadata: # Column Example 1 Virus name hCoV-19/Ireland/LS-NVRL-M35IRL03088/2021 2 Last vaccinated 3 Passage details/history Original 4 Type betacoronavirus 5 Accession ID EPI_ISL_3848896 6 Collection date 2021-08-07 7 Location Europe / Ireland / Laois 8 Additional location information 9 Sequence length 29715 10 Host Human 11 Patient age 21-30 12 Gender unknown 13 Clade GK 14 Pango lineage AY.