BEAGLE-LIB is a high-performance library to accelerate the calculations of Bayesian and Maximun Likelihood phylogenetics analyses. The latest version of beagle-lib was released on Dec 4, 2018.
When compiled for NVidia Tesla V100 on Debian buster 10.9, an error was encountered:
1 | nvcc fatal : Value 'compute_30' is not defined for option 'gpu-architecture' |
Pavian is a interactive browser application for analyzing and visualization metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn. Here are a few tips for Pavian to work with large data.
This post introduces how to complie latest R for RStidio, and install RStudio Server in a Debian host.
While installing the R package “hdf5r“ version 1.3.3, I encountered the error:
1 | fatal error: hdf5.h: No such file or directory |
My OS is Debian buster/10.6, and the package “libhdf5-dev” has been installed. It looks R cannot find the path of hdf5 header and library files.
Aria2 creats a “.aria2” file for each object it downloading. It can be used
to resume the download if necessary.
A couple of days ago, I received an email from the Let’s Encrypt and was told the certificate of my domain will expire soon. This domain has been encrypted by certbot and the automatic renewal worked well at that time. About one month ago, I added it to cloudflare CDN. It may hindered the certificate renew.
So I spent some time to fix the problem.
Most websites supports HTTPS right now. So I decided to re-configure my download server to HTTPS in weekend, and update aria2 to latest version.
Components:
Viewing and annotation of a huge phylogenetic tree, especially with hundreds or even thousamds taxa, is always a problem. This post provides a method to split a phylogenetic tree into multiple pages of a PDF file by pdfposter.
Since PyMOL 2.x released, there were no binary installer avaliable for Windows.
PyMOL Wiki provides the way to install open source PyMOL in Windows under Python 2.7.
This post provided the method to install PyMOL 2.x by conda (Anaconda or Minoconda) in Windows.
Conda is quite convenient for non-root users to install softwares in Linux system. But sometimes there is no packages available in anaconda repository and we have to install these softwares from source. This post introduces the way to compile and install softwares from source, use the Kyoto Cabinet Perl module as an example.