The Tab-Separeted Values (TSV) file is a simple text format and widely supported. The data are stored in a tabular structure, each record in the table is one line of the text file. And each field value of a record is separated by a tab character.

It is easy to operate TSV files in programming languages. But if the file were quite large, for instance, millions of lines, it would be difficult to operate the file. Under this circumstances, load the large TSV file into an SQLite3 databasea would be convenient for further operations.

MrBayes 3 is a program for Bayesian inference and model choice across a large space of phylogenetic and evolutionary models. And BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. BEAGLE is able to accelerate MrBayes analyses very much.

This post introduces the way to run MrBayes along with BEAGLE.

Jellyfin is a Free Software Media System that puts you in control of managing and streaming your media. It is an alternative to the proprietary Emby and Plex, to provide media from a dedicated server to end-user devices via multiple apps.

Here recorded the walkthrough of install and setup of Jellyfin docker image in a Debian bullseye/11.2 x86-64 NAS.

There is still no official OneDrive client for Linux, the project “OneDrive Client for Linux” is the only choice. It provides a powerful and highly configurable client can run on all major Linux distributions, FreeBSD, or as a Docker container. It supports one-way and two-way sync capabilities and securely connects to Microsoft OneDrive services.

This post is the workthrough of installation and configuration of OneDrive Linux ina headless Debian bullseye/11 server.

MetaPhlAn (Metagenomic Phylogenetic Analysis) is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.

This post describes the installation and setup of MetaPhlAn 3.0 in Debian 11/bullseye.

Last updated at: 2021-12-17.

Here are some miscellaneous tips for working on RStudio and writing R Markdown file. This blog will be updated from time to time.

See also:

• RStudio Cheatsheets

Due to the limited space of EndNote online, I still used to sync EndNote libraries through OneNote. The drawback is, the library might be corrupted occasionally (about once a couple of months).

I have introduced how to install R and RStudio Server before. But free version of RStudio Server lack of many security features, especially SSL.

This post introduces to secure RStudio Server by an Nginx reverse proxy.

This post provides instruction of installing DB Genomics Rhapsody™ Analysis pipeline in a local Linux server.

Kernel based Virtual Machine (KVM) is a widely used free and open source type 2 hypervisor for Linux distributions.

This post described a workthrough on how to install and configure QEMU/KVM on a Debian 10/buster server.