RStudio and R Markdown Tips
Here are some miscellaneous tips for working on RStudio and writing R Markdown file. It will be updated from time to time.
See also:
Fix Corrupted EndNote Library
Due to the limited space of EndNote online, I still used to sync EndNote libraries through OneNote. The drawback is, the library might be corrupted occasionally (about once a couple of months).
Setup RStudio Server Over Nginx Https
I have introduced how to install R and RStudio Server before. But free version of RStudio Server lack of many security features, especially SSL.
This post introduces to secure RStudio Server by an Nginx reverse proxy.
Setup BD Single Cell Genomics Rhapsody Analysis
This post provides instruction of installing DB Genomics Rhapsody™ Analysis pipeline in a local Linux server.
Install QEMU/KVM Server on Debian 10 Headless Server
Kernel based Virtual Machine (KVM) is a widely used free and open source type 2 hypervisor for Linux distributions.
This post described a workthrough on how to install and configure QEMU/KVM on a Debian 10/buster server.
Batch Calculate and Verify MD5 Checksum With GNU Parallel
Calculating or verifying md5 checksums for lots of file always a time-consuming process. Here are some notes for how to work with md5 checksum via GNU parallel.
Step by Step Install Open Source Pymol 2.x in Windows by Conda
This post was first released at 2019-05-26, and updated at 2021-04-20.
Since PyMOL 2.x released, there were no binary installer avaliable for Windows.
PyMOL Wiki provides the way to install open source PyMOL in Windows under Python 3.x.
This post provided the method to install PyMOL 2.x by conda (Anaconda or Minoconda) in Windows.
Create a Hugo Blog, along with Isso comment server
This post includes the workthrough of installation, configuration and integration of Hugo and Isso comment server.
Steps:
- Install and configure of Hugo
- Install and configure of Isso comment server in a remote server
- Integrate Isso with Hugo
- Publish to an existing GitHub Page
Environment:
Both local computer and remote server work on Debian bullseye.
Migrate to Hugo
The dependency of Node.js packages is over complicated and I have wasted lost of time on it. So I migrated the blog from Hexo to Hugo. Further more, the comment system moved to a self-hosted Isso-based server.
A workthrough will be online later.
Install beagle-lib for NVidia Tesla V100 on Debian buster
BEAGLE-LIB is a high-performance library to accelerate the calculations of Bayesian and Maximun Likelihood phylogenetics analyses. The latest version of beagle-lib was released on Dec 4, 2018.
When compiled for NVidia Tesla V100 on Debian buster 10.9, an error was encountered:
nvcc fatal : Value 'compute_30' is not defined for option 'gpu-architecture'