Software

Open-source wheels for PyMOL 3.0.x have been released in April 9, 2024, and the software distribution method has been changed. Former installation methods ^{1 2} could not work at all. Here provides a new walk through to install open-source PyMOL 3.0.x in Windows 11.

The method to install PyMOL in Windows 11 is out of date. Please refer to the most recent post: Install Open Source PyMOL 3.0.x in Windows 11.

The way to install open source PyMOL in the previous post can not work in Windows 11. The PyMOLWiki described the method to install PyMOL in windows. Here we provided more details of the installation.

• Kindly provided by Xu Meng.

This post descripts the way to install R and Rstudio in Windows using Scoop.

While using ZDOCK in Debian 11, an error message shew:

$ ./mark_sur
./mark_sur: error while loading shared libraries: libg2c.so.0: cannot open shared object file: No such file or directory

yt-dlp is a youtube-dl fork and able to download videos and audios from many streaming platforms, such as YouTube.

This blog describes installation in Debian bullseye and some common usage examples.

MrBayes 3 is a program for Bayesian inference and model choice across a large space of phylogenetic and evolutionary models. And BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. BEAGLE is able to accelerate MrBayes analyses very much.

This post introduces the way to run MrBayes along with BEAGLE.

Due to the limited space of EndNote online, I still used to sync EndNote libraries through OneNote. The drawback is, the library might be corrupted occasionally (about once a couple of months).

I have introduced how to install R and RStudio Server before. But free version of RStudio Server lack of many security features, especially SSL.

This post introduces to secure RStudio Server by an Nginx reverse proxy.

This post was first released at 2019-05-26, and updated at 2021-04-20.

Since PyMOL 2.x released, there were no binary installer avaliable for Windows.

PyMOL Wiki provides the way to install open source PyMOL in Windows under Python 3.x.

This post provided the method to install PyMOL 2.x by conda (Anaconda or Minoconda) in Windows.

BEAGLE is a high-performance library to accelerate the calculations of Bayesian and Maximun Likelihood phylogenetics analyses. The latest version of beagle-lib was released on Dec 4, 2018.

When compiled for NVidia Tesla V100 on Debian buster 10.9, an error was encountered:

nvcc fatal   : Value 'compute_30' is not defined for option 'gpu-architecture'