Run MrBayes Along With Beagle-lib

MrBayes 3 is a program for Bayesian inference and model choice across a large space of phylogenetic and evolutionary models. And BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. BEAGLE is able to accelerate MrBayes analyses very much.

This post introduces the way to run MrBayes along with BEAGLE.

MrBayes logo

Install beagle-lib for NVidia Tesla V100 on Debian buster

BEAGLE is a high-performance library to accelerate the calculations of Bayesian and Maximun Likelihood phylogenetics analyses. The latest version of beagle-lib was released on Dec 4, 2018.

When compiled for NVidia Tesla V100 on Debian buster 10.9, an error was encountered:

nvcc fatal   : Value 'compute_30' is not defined for option 'gpu-architecture'

Install hdf5r package in R 4.0.2

While installing the R package “hdf5r” version 1.3.3, I encountered the error:

fatal error: hdf5.h: No such file or directory
 #include <hdf5.h>
compilation terminated.

My OS is Debian buster/10.6, and the package “libhdf5-dev” has been installed. It looks R cannot find the path of hdf5 header and library files.